FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23580262
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA157700.010.66972294
AGATCGG190250.09.75830194
ATCGGAA145850.09.69977994
TCGGAAG169450.08.57074694
TAGATCG61350.08.00575292-93
GCGTCGT51300.07.695975394
AGAGCGT100800.07.41375794
CGGAAGA182700.07.023051794
AGCGTCG67100.06.79439894
CAGATCG83200.06.77890794
GTCGTGT52800.06.14210194
AAGATCG87550.05.771021492-93
CGTCGTG56850.05.704536494
GAGCGTC107300.05.606760594
AAGAGCG126750.05.562180594
CGCCGTA17100.05.496880546-47
Produced by FastQC (version 0.11.5)