FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005406504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25410987
Sequences flagged as poor quality0
Sequence length87-101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA751050.2955611287353774No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT596400.234701627292163No Hit
GCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTTCTT409560.16117437705194215No Hit
CTCCAGCGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTT294680.11596558606716063No Hit
CGTGTGGTGTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGTGT274750.10812252196264553No Hit
GGTCTCGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGG263950.10387239189095646No Hit
ATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTCAGTAACGG257280.10124754304112626No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)