Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406573 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10267684 |
Sequences flagged as poor quality | 0 |
Sequence length | 46-101 |
%GC | 55 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CACACACACACACACACACACACACACACACACACACACACACACACACA | 40311 | 0.3926007072286214 | No Hit |
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | 32560 | 0.31711143428255095 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 12611 | 0.12282224501650031 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATTAG | 2395 | 0.0 | 19.378088 | 1 |
TATCTAG | 1515 | 0.0 | 16.879963 | 1 |
CGCGTGT | 1955 | 0.0 | 16.714472 | 1 |
TGTGCGT | 3875 | 0.0 | 16.611788 | 8 |
TATTAGA | 2695 | 0.0 | 16.509066 | 2 |
GTACTAG | 1020 | 0.0 | 15.78589 | 1 |
GTATGAA | 4340 | 0.0 | 15.713144 | 1 |
GTACTAA | 780 | 0.0 | 15.178741 | 1 |
TAGGGTC | 3365 | 0.0 | 15.050467 | 4 |
TATACTG | 1740 | 0.0 | 14.689121 | 5 |
ATAGGGT | 3620 | 0.0 | 14.251783 | 3 |
TTAGAAC | 1530 | 0.0 | 14.23042 | 3 |
TATGAAT | 4130 | 0.0 | 14.211013 | 2 |
GTGCGTC | 4665 | 0.0 | 14.204488 | 9 |
TAATACT | 2250 | 0.0 | 14.094302 | 4 |
CATAGGG | 4050 | 0.0 | 13.907381 | 2 |
TACTAGG | 1140 | 0.0 | 13.701323 | 2 |
GTTTAGG | 2750 | 0.0 | 13.604567 | 1 |
TAGATAG | 1225 | 0.0 | 13.523317 | 5 |
GTCCTAT | 2045 | 0.0 | 13.431515 | 1 |