EGAF00005406578 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005406578
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28324001
Sequences flagged as poor quality	0
Sequence length	84-101
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACAGGAATCTCTACCTGTTATCCATCGACTACGCCTCTCGGCCTTGCC	53575	0.1891505370304146	No Hit
TTCCTGTACTGTGTCAAATCGTTAAGAGCGAAGGAGGGACGCAGGAGGTG	40037	0.14135361737912663	No Hit
GCCTTAGACGGCTCCTTCCCGAAGGTTAGGCCACCGGCTTTGGGCATTGC	36376	0.1284281835747711	No Hit
GATCAATGGAGCGCTTAGAAGTGAGAATGCCGGTATGAGTAGCGAAAGAT	33412	0.11796356030350373	No Hit
GTTGTGGGTAGCGGTGAAATTCCAAACGAACTTGGAGATAGCTGGTTCTC	32410	0.11442592450127367	No Hit
CCTTTACACTCTGCGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGC	31654	0.11175681006366296	No Hit
GGGTAAGTCGGGACCTAAGGCAAGGCCGAGAGGCGTAGTCGATGGATAAC	30880	0.10902414528229963	No Hit
CCTCTATCCTTCTTCACCAACAACAGAGCTTTACGATCCGAAAACCTTCT	30411	0.10736830577007818	No Hit
GGGTTGGGCTGTTCGCCCATTAAAGCGGCACGCGAGCTGGGTTCAGAACG	29958	0.1057689554523035	No Hit
GTACTGGTCCGCTCCATCCTTCACAGGACTTCCACTCCCAGCCTATCTAC	28328	0.10001411876803704	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATTAGTA	2840	56.978447	2
GTCCGCT	9165	33.55592	7
TGGTCCG	10085	33.168953	5
TAGTACT	5305	32.910103	4
TTAGACG	12495	30.558043	4
CCTAATA	9415	30.55527	2
ACTGGTC	10535	30.404818	3
GCCTAAT	9740	29.87576	1
AGTACTG	7060	27.27583	5
GGTCCGC	11925	27.257536	6
TAGACGG	15355	27.11572	5
TAATACA	11305	26.827223	4
CTTAGAC	15610	26.309046	3
AATACAT	11665	25.918175	5
ACGGCTC	15615	24.514551	8
ATACATG	12510	24.016222	6
AGACGGC	16315	23.954176	6
GACGGCT	16795	23.156883	7
TACACTC	14950	23.134731	5
TATTAGA	3755	23.059187	2