Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406618 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 35062025 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCGCG | 2070 | 0.0 | 21.56965 | 40-41 |
ATCGCGT | 1805 | 0.0 | 17.445648 | 42-43 |
GTATCGA | 3535 | 0.0 | 14.35901 | 4 |
CGTATCG | 4355 | 0.0 | 14.137522 | 3 |
CGCGTAT | 1305 | 0.0 | 13.505488 | 44-45 |
CCCGTAT | 6270 | 0.0 | 12.527445 | 1 |
CCCGTCT | 15685 | 0.0 | 12.324545 | 1 |
GTCCGAT | 3225 | 0.0 | 11.813236 | 1 |
CCGTATC | 7075 | 0.0 | 10.895811 | 2 |
TCGACCG | 2025 | 0.0 | 10.09629 | 30-31 |
TATGCCG | 3525 | 0.0 | 9.799811 | 48-49 |
TCTACTA | 23240 | 0.0 | 9.484772 | 7 |
CCGGAAT | 5960 | 0.0 | 9.391053 | 1 |
ACGTTCG | 2360 | 0.0 | 9.360003 | 6 |
GTCGTTT | 3930 | 0.0 | 9.215347 | 1 |
CGCTATT | 2825 | 0.0 | 9.157097 | 1 |
AATCTCG | 11405 | 0.0 | 9.107241 | 40-41 |
TCGTATG | 3025 | 0.0 | 9.089082 | 44-45 |
CTCGAGT | 6800 | 0.0 | 9.060996 | 1 |
CGATTGG | 3120 | 0.0 | 9.0383005 | 4 |