Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406622 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32886772 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGTAT | 1585 | 0.0 | 23.425442 | 44-45 |
ATCGCGT | 1890 | 0.0 | 22.380527 | 42-43 |
TATGCCG | 5095 | 0.0 | 19.648333 | 48-49 |
TCGTATG | 3795 | 0.0 | 16.65714 | 44-45 |
CGTATGC | 5835 | 0.0 | 16.270496 | 46-47 |
GTATCGA | 4010 | 0.0 | 15.471075 | 4 |
CGTATCG | 4515 | 0.0 | 14.989795 | 3 |
GATCGCG | 3735 | 0.0 | 13.464279 | 40-41 |
CCCGTAT | 6465 | 0.0 | 12.949495 | 1 |
CTCGTAT | 5190 | 0.0 | 12.58744 | 44-45 |
GCGTATG | 3100 | 0.0 | 12.280421 | 44-45 |
CCGTATC | 7165 | 0.0 | 12.267833 | 2 |
TGATCGC | 4120 | 0.0 | 12.206088 | 40-41 |
CCCGTCT | 15315 | 0.0 | 11.884895 | 1 |
GTATGCC | 8750 | 0.0 | 11.8169365 | 46-47 |
GTCCGAT | 3020 | 0.0 | 11.057395 | 1 |
CGCTATT | 2175 | 0.0 | 10.595909 | 1 |
TATCGAA | 6750 | 0.0 | 10.583535 | 5 |
ATCGAAG | 8945 | 0.0 | 10.508496 | 6 |
CGGGTAT | 3440 | 0.0 | 9.844087 | 1 |