Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406682 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37306903 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCGCG | 1770 | 0.0 | 15.931903 | 40-41 |
CGTATCG | 4960 | 0.0 | 13.1711855 | 3 |
GTATCGA | 4135 | 0.0 | 12.957496 | 4 |
GTCCGAT | 3510 | 0.0 | 12.596458 | 1 |
CCCGTAT | 6800 | 0.0 | 12.035609 | 1 |
CCCGTCT | 17090 | 0.0 | 11.256645 | 1 |
CGCTAAT | 1375 | 0.0 | 10.946494 | 1 |
CCGGCAT | 7925 | 0.0 | 10.742541 | 1 |
CCGTATC | 7515 | 0.0 | 10.695765 | 2 |
CTCGTAT | 3975 | 0.0 | 10.294609 | 1 |
ATCCGGA | 9030 | 0.0 | 10.123294 | 34-35 |
TCTACTA | 23570 | 0.0 | 10.069862 | 7 |
AATCCGG | 9075 | 0.0 | 9.9177265 | 34-35 |
CAATCCG | 8970 | 0.0 | 9.850429 | 32-33 |
TCGCGTT | 3240 | 0.0 | 9.646424 | 32-33 |
CTACTAA | 23445 | 0.0 | 9.441965 | 8 |
CGATTGG | 3245 | 0.0 | 9.414351 | 4 |
AGTTACG | 4530 | 0.0 | 9.233866 | 6 |
TCGACCG | 2750 | 0.0 | 8.9727335 | 30-31 |
TACTAAA | 26950 | 0.0 | 8.9638815 | 9 |