Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406690 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39483331 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 4895 | 0.0 | 18.962877 | 48-49 |
ATCGCGT | 1915 | 0.0 | 15.952707 | 42-43 |
TCGTATG | 4405 | 0.0 | 15.89755 | 44-45 |
CGTATCG | 4930 | 0.0 | 15.729971 | 3 |
GTATCGA | 4575 | 0.0 | 15.512321 | 4 |
CGTATGC | 5960 | 0.0 | 15.416661 | 46-47 |
CGCGTAT | 1660 | 0.0 | 15.005746 | 44-45 |
CCCGTAT | 6990 | 0.0 | 14.668735 | 1 |
ACGGACT | 10910 | 0.0 | 13.569884 | 32-33 |
CGGACTT | 11670 | 0.0 | 12.988208 | 32-33 |
CTCGTAT | 5940 | 0.0 | 12.303644 | 44-45 |
CCGTATC | 7640 | 0.0 | 12.243191 | 2 |
GTCCGAT | 3585 | 0.0 | 12.070131 | 1 |
CCCGTCT | 17780 | 0.0 | 11.798218 | 1 |
TCTACTA | 24400 | 0.0 | 10.863747 | 7 |
CGCTAGT | 1445 | 0.0 | 10.741363 | 1 |
GTATGCC | 9135 | 0.0 | 10.701499 | 46-47 |
CTACTAA | 23450 | 0.0 | 10.442039 | 8 |
AGTCACG | 14880 | 0.0 | 10.297113 | 28-29 |
ATCGAAG | 10305 | 0.0 | 10.125021 | 6 |