Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005406770 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39553632 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGAAG | 92590 | 0.0 | 12.649516 | 94 |
ATCGGAA | 97880 | 0.0 | 11.08715 | 94 |
CGGAAGA | 82805 | 0.0 | 10.630928 | 94 |
GATCGGA | 106140 | 0.0 | 10.609581 | 92-93 |
ACACGTC | 33650 | 0.0 | 9.343961 | 94 |
AGATCGG | 116960 | 0.0 | 8.703855 | 90-91 |
TAGATCG | 27285 | 0.0 | 8.311202 | 90-91 |
CACACGT | 41065 | 0.0 | 8.206109 | 94 |
CAATTCT | 33445 | 0.0 | 7.869019 | 1 |
CGATTCT | 19190 | 0.0 | 7.8508196 | 1 |
CAGATCG | 33690 | 0.0 | 7.491413 | 90-91 |
CTACTCG | 19330 | 0.0 | 7.306837 | 1 |
GCACACG | 48060 | 0.0 | 6.9139485 | 92-93 |
CACGTCT | 35150 | 0.0 | 6.79248 | 94 |
CTAATTT | 86065 | 0.0 | 6.5972166 | 1 |
GAGATCG | 80560 | 0.0 | 6.4845595 | 90-91 |
TACTCGG | 20840 | 0.0 | 6.4837193 | 2 |
ACGTCTG | 30790 | 0.0 | 6.3805265 | 94 |
CGTCTGA | 25355 | 0.0 | 6.3394628 | 94 |
CTAGTTT | 14570 | 0.0 | 5.977949 | 1 |