EGAF00005406794 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005406794
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33306367
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	51390	0.0	8.633472	94
GATCGGA	45260	0.0	8.535902	94
TAGATCG	17015	0.0	8.065718	94
ATCGGAA	42675	0.0	7.9295964	94
TCGGAAG	43875	0.0	7.4984765	94
CGGAAGA	42030	0.0	7.469804	94
CACACGT	21205	0.0	7.0925736	94
CGTCTGA	13045	0.0	6.9535303	94
ACACGTC	16910	0.0	6.7539024	94
GCACACG	25255	0.0	6.457646	94
AAGATCG	22270	0.0	6.4157214	94
ACGTCTG	16830	0.0	6.0878577	94
CAGATCG	15140	0.0	5.960291	94
CACGTCT	19360	0.0	5.802093	94
GAAGAGC	55430	0.0	5.4350715	94
AGAGCAC	41955	0.0	5.2314887	94
GAGATCG	36550	0.0	5.1049943	94
GAGCACA	43200	0.0	5.0372014	94