FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29565685
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTA12700.021.09789342-43
CGCGTAT14450.019.0313844-45
TATGCCG41550.017.1940948-49
CGTATGC41600.017.11874246-47
ATCGCGT18800.014.50234142-43
TCGTATG34600.013.1109344-45
CTCGTAT39650.011.79674444-45
ATGCCGT72750.010.1431648-49
GCGTATG28800.09.46711744-45
CGACACA82550.09.30857134-35
TCTCGTA52500.09.04336442-43
ACCGACA88350.08.72408132-33
GCCGTCT85700.08.66532150-51
ATCGGAA728200.08.28091294
AGATCGG850550.08.2446394
GATCGGA780050.08.22455594
CCGTCTT96000.07.931161452-53
GTATGCC97300.07.89873346-47
ATCTCGT66900.07.834597642-43
CGGAAGA667700.07.785310794
Produced by FastQC (version 0.11.5)