FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29429516
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG285700.09.85315194
TCGTGTA182050.09.47401294
GCGTCGT248800.09.33114994
CGTCGTG236900.09.08571294
CGTGTAG181400.08.86027994
ATCGGAA652100.08.71305994
AGAGCGT378800.08.64731794
AAGAGCG429100.08.61935594
AGATCGG791050.08.56088494
GATCGGA704900.08.54710694
GTCGTGT209500.08.479423594
GAGCGTC354500.08.3651194
TCGGAAG640450.08.21113994
TAGATCG216800.07.99881594
CGGAAGA605000.07.88441194
AAGATCG247500.07.158544594
CAGATCG243550.06.464206794
GAAGAGC676350.06.246644594
GTGTAGG227250.06.162698794
GAGATCG423250.06.00701794
Produced by FastQC (version 0.11.5)