FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22783469
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG192000.09.91311994
GTCGTGT167350.09.74451694
AGCGTCG235300.09.48698594
GCGTCGT206400.09.4036694
AGATCGG677450.09.35817794
AGAGCGT313950.09.02637694
GATCGGA598800.08.96274194
TCGTGTA145250.08.92995994
ATCGGAA548150.08.907845594
AAGAGCG355850.08.78235994
CGTGTAG149550.08.64177294
TCGGAAG530700.08.39490594
CGGAAGA502350.08.36349294
GAGCGTC290450.08.34900894
TAGATCG213300.08.3062994
AAGATCG233100.07.479768894
GAAGAGC548850.06.54178594
GTAGGGA163950.06.27753694
CAGATCG190750.06.257858392-93
GTGTAGG184600.06.0844794
Produced by FastQC (version 0.11.5)