FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31625159
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA668700.08.9683694
AGATCGG799100.08.59884294
GATCGGA715450.08.50715394
TCGGAAG650550.08.38052194
TAGATCG250750.08.24717994
ACACGTC245800.08.03084394
CGGAAGA613950.07.961484494
CGTCTGA176550.07.720118594
GCACACG344350.07.6706194
CACACGT292500.07.632405394
ACGTCTG225050.07.267648794
AAGATCG295600.06.789177494
CACGTCT255800.06.761467594
AGAGCAC549350.06.527834494
GAAGAGC716450.06.14021694
GAGCACA553350.06.12391494
CAGATCG223750.06.112567494
GAGATCG412900.05.97596694
AGCACAC478800.05.80132394
AAGAGCA694700.05.743862694
Produced by FastQC (version 0.11.5)