FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32744853
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG247050.09.73957894
AGCGTCG297550.09.20796694
AAGAGCG451750.09.05057494
GCGTCGT260350.09.0073794
TCGTGTA191950.08.9853194
ATCGGAA697000.08.9608194
GATCGGA755100.08.78790394
AGAGCGT396400.08.76124694
TCGGAAG676050.08.66847594
CGTGTAG191150.08.55578894
GAGCGTC369300.08.53882994
AGATCGG843450.08.40227894
GTCGTGT218150.08.16467894
CGGAAGA634850.07.987398694
TAGATCG278350.07.952152794
AAGATCG293500.07.397567794
CAGATCG231950.06.86847694
GAAGAGC714650.06.31295894
GAGATCG406300.06.03780194
GTGTAGG249650.05.948542694
Produced by FastQC (version 0.11.5)