FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26324580
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG259400.09.91000594
GTCGTGT191000.09.8173994
CGTCGTG213250.09.52031394
GCGTCGT226550.09.41777594
TCGTGTA164850.09.03705494
AGAGCGT343850.08.92484594
GATCGGA653200.08.77748694
ATCGGAA602250.08.61487194
TCGGAAG586250.08.60148494
GAGCGTC318950.08.54598194
AAGAGCG389700.08.34511394
AGATCGG727900.08.23180394
TAGATCG245250.08.182394
CGTGTAG164550.08.11104894
CGGAAGA550500.08.07588994
AAGATCG247650.07.30598894
CAGATCG192350.06.425694594
GAAGAGC599800.06.31517194
GAGATCG351150.06.15632794
GTGTAGG211050.05.923150594
Produced by FastQC (version 0.11.5)