FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005406892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25023273
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA637300.09.14473794
GATCGGA687550.08.7976794
ACACGTC232600.08.60782394
AGATCGG766650.08.53979494
CGTCTGA164850.08.3820894
TCGGAAG612350.08.31999494
CGGAAGA578650.08.17100594
CACACGT274250.07.968925594
ACGTCTG206350.07.744045394
CACGTCT234100.07.709447494
TAGATCG235750.07.69536194
GCACACG318700.07.40312694
AAGATCG290550.06.82629494
AGCACAC424500.06.775902394
AGAGCAC491700.06.71967994
CAGATCG197400.06.642789494
GAGCACA495200.06.40643794
GAAGAGC636300.06.31535394
AAGAGCA619900.05.66359894
GAGATCG378450.05.327729794
Produced by FastQC (version 0.11.5)