FastQCFastQC Report
Thu 16 May 2024
EGAF00005406941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124647164
Total Bases12.5 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2138540.17156748147113882No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1758400.14107019715266045No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1581870.12690782118396213No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1577980.1265957402769308No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1436330.11523166303246178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)