FastQCFastQC Report
Sun 12 May 2024
EGAF00005406954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005406954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94610780
Total Bases9.4 Gbp
Sequences flagged as poor quality0
Sequence length64-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1950730.20618474977164336No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1491490.1576448265197687No Hit
GCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGG1119050.11827933349666919No Hit
CCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGC1106880.1169930107330264No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1029820.10884806149996862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)