FastQCFastQC Report
Thu 16 May 2024
EGAF00005407062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101934641
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length66-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGC2816620.2763162721100867No Hit
CCCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGG1955930.19188079545990652No Hit
CCCGACTCCGGGAAGACCCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCC1355380.13296559311961476No Hit
GCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGGGCCCGGCGCGCC1082580.1062033465149497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)