FastQCFastQC Report
Sun 12 May 2024
EGAF00005407125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93064418
Total Bases9.3 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC4629210.4974199698965506No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1116510.11997173828562492No Hit
GTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTC960840.10324461492898392No Hit
GCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT958310.1029727602229243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)