FastQCFastQC Report
Sun 12 May 2024
EGAF00005407176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81974922
Total Bases8.2 Gbp
Sequences flagged as poor quality0
Sequence length64-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGC937290.11433862663510677No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA891090.10870275667965869No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC872300.10641059225405544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)