FastQCFastQC Report
Thu 16 May 2024
EGAF00005407217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114017505
Total Bases11.5 Gbp
Sequences flagged as poor quality0
Sequence length25-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA1837710.16117788229096927No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC1429810.1254026739139749No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1226570.10757734086533467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)