FastQCFastQC Report
Thu 16 May 2024
EGAF00005407280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102480084
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length65-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGC2982600.29104191600779716No Hit
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1819540.1775505960748432No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC1158400.1130365974329217No Hit
GCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTGAAGGGCAGGGC1141780.11141481890276358No Hit
CCCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGG1072540.10465838415979441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)