FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14785074
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCAACG25550.020.61405610-11
CAACGCA38050.015.23160612-13
GTATCAA37250.014.9429359
TCAACGC33000.014.00818712-13
AACGCAG43850.013.21635414-15
ACGCAGA46350.012.900434514-15
GGTATCA51650.011.2221758
GTGGTAT56100.09.7580016
AGAGTAC39100.09.52944118-19
TGGTATC54450.09.377827
CTACACG9651.9987056E-78.1484651
AGTGGTA78800.07.64686975
GCGCTAG15558.913048E-117.395496492
ACGACGC10609.751238E-77.37703235
AGCAGTG105900.07.3412082
CGCAGAG68250.07.278774316-17
AAGCAGT109600.07.17451521
CAGTGGT90950.06.97935064
CGACCGT12107.766106E-66.462807792
CTAGTCG16401.5470505E-86.451217792
Produced by FastQC (version 0.11.5)