FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40128972
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGAT138850.017.9776271
GACTAAC148500.017.7757531
CGGAGCT132400.017.7695431
ATGCGAT133700.017.6723521
CAATGGA209650.017.5957818
TGAGCCG138950.017.5937581
GATGCTA149050.017.5609931
GGATTAC167000.017.5433711
TGGGCGT153800.017.5180231
TGAGCAT157550.017.4217851
CTAGCCT201600.017.3497161
TGACTAG122000.017.3376671
ACTGATG126050.017.3017441
AAACCTG133600.017.2997971
TGGCTGG149950.017.2331851
AAATGCC131400.017.1895071
GGAACTT139200.017.1773761
TACGGGC158100.017.1758041
TGACGGC140050.017.1741471
CTGATAG153250.017.1456581
Produced by FastQC (version 0.11.5)