FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40208928
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGAT139050.017.9941581
GACTAAC146500.017.9206331
ATGCGAT134000.017.9030821
CGGAGCT126650.017.8649061
GATGCTA151300.017.7795581
TGAGCCG143900.017.6756041
CAATGGA208600.017.6075618
GGATTAC167700.017.4749851
TACGGGC156600.017.4617541
TGGGCGT156800.017.3363671
TGAGCAT162050.017.3110071
CTAGCCT203400.017.2695371
TGACGGC134850.017.2581731
ACTGATG125350.017.2198261
TGACTAG127950.017.2016241
TGGCTGG145900.017.1839641
CTGATAG154050.017.1800981
AAATGCC134250.017.1621761
GCGCAAC168400.017.1143051
AAACCTG136650.017.0973991
Produced by FastQC (version 0.11.5)