FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35145588
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTACC170450.017.770741
ATGCGAT96800.017.7252481
CCACTAC157300.017.7091311
GACTAAC101700.017.4994141
GGGACCT95400.017.3369581
TGGCCAG156250.017.3089331
GGCGACT103050.017.2406431
AGACGTT120550.017.227811
CGACCTT132650.017.1470471
CGATTGA130450.017.1019611
CCTACCA164500.017.081971
GGCCGAA91950.017.0503719
CCGGGAT88200.017.0391121
GCGCGAT70600.016.9921131
AGGACCC94600.016.9846869
GCCGAAT92200.016.97162610
ACTGAAC88800.016.9696621
CTGATCC104500.016.9043771
ACGATGT124750.016.8997881
ACTGATG85800.016.8775041
Produced by FastQC (version 0.11.5)