FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31248848
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGCCTA159300.018.1802331
GCGGGTT113300.017.9866871
CTCGAAA108200.017.9376091
GGAACTT154350.017.918431
TGATTTC159200.017.9059181
GGCGACT106800.017.898261
CCTACCA181400.017.5367871
CGCTGGA129700.017.4347841
CGACCTT140100.017.3166431
CTAAGAC108900.017.2932051
GCGCGAT78200.017.2828451
GACTAAC88500.017.2360021
CGGAGCT82350.017.1606641
CTTTGCG106450.017.1404441
TACTGTA124150.017.1325914
GCATGCG117900.017.1134381
CTCTACG105650.017.050171
ATAGACC79750.017.0483421
ACACCCT140150.017.0147421
TCGCGAG125550.016.9643941
Produced by FastQC (version 0.11.5)