FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12647914
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACCTA82200.018.1814881
TGATTTC57650.018.1415391
CTGATAG54150.018.119821
CTGAAGT55150.018.0844271
GCTGCGA52150.017.9234051
GCGATCA51450.017.8902594
TCTATTG91850.017.8775221
TGCGGGT52000.017.8585111
ATGCGAT44200.017.7407741
CGCTATC59250.017.719861
CCGTACT46950.017.6486431
GGGACCT37450.017.5116041
TGCGTGG44500.017.5076331
CAAGGAC62000.017.4745398
GCACATA59900.017.4600961
ACACCCT52650.017.4269161
CTGCGAT37000.017.3426382
TATTGTC53750.017.3308283
TAGCTAA46550.017.3269469
CCACTAC43300.017.2927231
Produced by FastQC (version 0.11.5)