FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30449884
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT109850.018.534981
GCGCGAT108150.018.5216051
CTAAGAC109550.018.3883171
TTAGGCA155000.018.2520871
CTGCGGA161550.018.1176831
CTTAGGA114500.017.9801311
ATAGACC143150.017.9068471
TACACGA96050.017.5953031
GGGAGAT75100.017.5805971
TACGGAT98700.017.5611321
GCAGTTA94600.017.4839651
ATCGAGT86050.017.3541221
CTACCCA86600.017.2795831
TCGCGAG120350.017.2173961
TGACTAG93900.017.2084941
GGTATTG109250.017.1850471
CGACCTT103350.017.1197811
AGCCTAA137850.017.101121
GTGATAA109350.017.0926328
TATGCCC97850.017.0716511
Produced by FastQC (version 0.11.5)