FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35199199
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTACC168450.017.8126011
CCACTAC153150.017.6526951
GACTAAC109150.017.6047021
GGCGACT100550.017.3521061
ATGCGAT100600.017.3334371
TGGCCAG155000.017.292091
AGACGTT119600.017.2575471
CCTACCA159400.017.1443441
TGCGGGT102800.017.0607641
GGGACCT91050.016.9988961
ACGATGT123450.016.9239351
CCGGGAT88650.016.923481
GCGCGAT71000.016.904411
CGATTGA134550.016.8717941
CTGATCC106450.016.8554061
TATTGGT126700.016.8514463
ACTGATG89650.016.802321
CTCGAGG102950.016.8003881
CGACCTT130600.016.77871
CGCTTCA107150.016.7547191
Produced by FastQC (version 0.11.5)