FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40244586
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACTAAC141900.018.228681
GATGCTA146500.017.9729861
CCGGGAT140350.017.9672261
ATGCGAT128200.017.949121
TGAGCCG142850.017.8692931
CGGAGCT123250.017.8251631
GGATTAC162400.017.68611
CTAGCCT199000.017.6245571
CAATGGA208250.017.5945478
TGACTAG126300.017.590611
GCGCAAC165000.017.576111
TGGGCGT151400.017.5206781
TACGGGC154050.017.5003591
CTGATAG154000.017.4926531
TGAGCAT157800.017.4830041
GGAACTT137450.017.4762441
ACTGATG121150.017.410821
CGTTGGG200400.017.3779641
GACGCGT119700.017.354731
TGGCTGG142300.017.3370321
Produced by FastQC (version 0.11.5)