FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36902928
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACTAAC122900.017.7902491
ATCGAGT148400.017.7258931
GGGAATG128600.017.6409451
GGCGACT132450.017.5293081
CTGATCC128950.017.406481
CGACCTT155150.017.3876191
CCACTAC154900.017.3639071
ATTGGAC135300.017.2341611
CCAGCGA150000.017.1090891
ACCCACT129200.017.0236361
CTGAAGT116650.016.998861
TACACGA92150.016.981881
GCGCGAT89850.016.9814511
GTCGACT77300.016.9032828
ATAGACC95400.016.8552111
GATCGCG137050.016.8385411
ACTGATG103950.016.8286461
AGCTCGC117450.016.7682679
ACTGAAC97100.016.7562751
CTTACCG120800.016.7468221
Produced by FastQC (version 0.11.5)