FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53809175
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGGGT247350.018.3709321
GGAACTT256200.018.1508711
GACCAAT215600.017.9007451
ATAGACC161500.017.8702411
TGACTAG166950.017.6636181
GCGCGAT118050.017.6173251
ATGCGAT158650.017.580341
TGCCAAA188150.017.4872951
CTCGAAA159000.017.4767931
GAATGAA185350.017.4121251
CCCTCCT272250.017.3269961
TGCACCT224850.017.2743931
CGCTGGA168350.017.1553671
ACGAGGA162350.017.1225191
GGGTTGC227800.017.0687961
GGGAGAT158150.017.0687031
CAACTAG226650.017.0143721
CCGTACT140000.016.9689311
TGACGGC149300.016.961671
CGATGGC236950.016.9231531
Produced by FastQC (version 0.11.5)