FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40027211
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGAT138600.018.181961
ATGCGAT135250.017.934721
GACTAAC144400.017.8169921
GATGCTA146600.017.674181
CAATGGA209700.017.6587438
TGGGCGT150600.017.6291351
GGATTAC164950.017.5900081
TGAGCCG140250.017.5629771
ACTGATG123550.017.5146061
TACGGGC154250.017.5145231
CTAGCCT205200.017.4670091
TGAGCAT157150.017.4237161
CGGAGCT131750.017.4178371
CTACCCA144850.017.3834341
GCGCAAC165600.017.3433041
GACGCGT120550.017.2183171
TGGCTGG147200.017.1886181
TGACTAG125200.017.1865481
TGACGGC136700.017.1433531
CTGATAG156100.017.0924821
Produced by FastQC (version 0.11.5)