FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32790674
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGACC132900.018.3584791
ACCCACT151750.018.0452771
CGCTGGA148650.017.9586771
CGCTTCA138550.017.850861
CGGACTG103350.017.5073931
CGGAGCT136650.017.439971
ACTGATG99150.017.4324971
TGCGGGT113200.017.40541
GAATGAA92750.017.4024851
CTAATGG128900.017.3737261
TGACAAC148050.017.1702121
CCTCTGA117800.017.0865331
GACTAAC86000.017.0386261
CTGCCTA112850.017.0020481
AGTTGGT148800.016.9544541
GCTCTGT123850.016.8238281
CCGGGAT72700.016.7871651
AGCGGAT91750.016.7742798
AGCCTAA116450.016.745831
CTTTGCG97100.016.5811791
Produced by FastQC (version 0.11.5)