FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24279942
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCACCTA143450.018.1301691
GGGACCT91150.017.8884371
CCACTAC79400.017.5602111
GAAACTC110050.017.5318281
TCTGGAA84800.017.4897041
GTAACTG101450.017.4655251
ACTGATG79850.017.435961
GGGCATC88700.017.4264181
TACTTAC124400.017.3923531
ATGCGAT63950.017.3189931
TGGACGC76100.017.3001351
TACTTGT100150.017.2789131
CTAAGAC77550.017.2110041
CCGGTAG101150.017.2079011
TGAGCAT95650.017.1418461
GATGCTA90650.017.107241
TATGCCC66000.017.0871
CGGACTG72350.017.0665021
CGGAGTC107000.017.0596921
CGGACGT61550.017.026521
Produced by FastQC (version 0.11.5)