FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24062958
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT88750.017.96571
CCACCTA143450.017.817931
CGGACTG75550.017.8124791
TACTTGT98800.017.5504381
CTAAGAC79450.017.5234991
TGGACGC75100.017.501861
GAAACTC113550.017.4967021
ACTGATG79400.017.496331
GTAACTG96950.017.3430391
TCTGGAA82900.017.3308681
TACTTAC119500.017.3277761
TATGCCC73000.017.2851241
ATGCGAT61650.017.2693541
GGGCATC91400.017.2678181
CCGGTAG102200.017.1644291
TGAGCAT98950.017.145771
TGAGCCG65800.017.117491
GATGCTA90900.017.0847281
CGCTGGA65100.016.9288041
TGCGCAG114100.016.8541031
Produced by FastQC (version 0.11.5)