FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35298932
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTACC167200.018.0252931
GACTAAC105300.017.8088441
ATGCGAT93700.017.7263031
AGACGTT117500.017.6258851
GGCGACT101450.017.6112331
GGGACCT91500.017.6007271
CGATTGA127800.017.5275571
CCACTAC156100.017.4786471
CGACCTT131900.017.4436231
GCGCGAT71400.017.3315541
CCTACCA157600.017.3188291
TGGCCAG154850.017.2604261
TAGCCGG109800.017.257271
TGCGGGT101050.017.2017061
CTGATCC105700.017.1858121
ACTGATG86550.017.1192421
ACGATGT123150.017.0765971
GGGCATC104450.017.0560821
CGCTTCA107950.017.0471421
CCGGGAT86850.016.9889261
Produced by FastQC (version 0.11.5)