FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35323233
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTACC169750.017.7251381
GACTAAC106250.017.7193261
CCACTAC158450.017.640611
ATGCGAT95000.017.6109681
GGCGACT102400.017.3668611
GGGACCT91550.017.3454071
TGGCCAG164000.017.272111
CCGGGAT92950.017.2693751
TGATACG99650.017.21825810
CGACCTT127200.017.2053871
ACGATGT124800.017.1305161
AGACGTT126450.017.0591561
CGATTGA135600.017.050731
GCGCGAT71650.017.0462111
TGCGGGT105000.017.0429211
CTGATCC106600.016.9771231
AGGACCC96050.016.8960369
CTCGAGG100700.016.8554881
CCTACCA166900.016.844571
TATTGGT122050.016.825853
Produced by FastQC (version 0.11.5)