FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31243763
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAACTT160200.018.1464541
CTGCCTA162700.018.1229631
GCGGGTT118050.018.0508251
TGATTTC157400.017.9800111
CTCGAAA109950.017.8968961
GGCGACT106400.017.8559671
CCTACCA175750.017.7285631
CGCTGGA124500.017.5307331
ACACCCT135900.017.491711
CGACCTT131150.017.383531
CTAAGAC107100.017.3797451
GCGCGAT75200.017.3414121
ATCGAGT104350.017.2260191
TTTCCTC182500.017.1949961
GAAATGA145550.017.1743661
CGGAGCT90150.017.1294331
ATAGACC82550.017.1230411
GCATGCG114600.017.0822961
TATGAAA78750.017.0543389
CTCAAGC98750.017.0509626
Produced by FastQC (version 0.11.5)