FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31237522
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGCCTA158850.018.3863221
GGAACTT152050.018.3814011
CTCGAAA108000.018.3565481
GCGGGTT111950.018.3258651
TGATTTC155550.018.239541
GGCGACT104500.018.0242731
CCTACCA179350.017.9574681
CGCTGGA119250.017.7054541
GCGCGAT72550.017.6205621
GGGACCT82050.017.6159021
GACTAAC92200.017.6110461
CCGGGAT77450.017.583971
GCATGCG114350.017.5715941
CGACCTT125400.017.5030461
CATCGAA122600.017.465521
ATAGACC77850.017.4538921
CTAAGAC107800.017.4342561
GAAATGA140250.017.4286671
TTTCCTC172450.017.3428331
CTCTACG106300.017.3311271
Produced by FastQC (version 0.11.5)