FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50471579
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGACC198400.018.3732931
CGCTGGA225900.017.9684851
ACCCACT227500.017.9357361
CGCTTCA216900.017.8676761
GACTAAC134600.017.5348431
CGGACTG151950.017.3482691
TGCGGGT177950.017.3271121
TGACAAC227900.017.3212431
CTAATGG193450.017.3072221
ACTGATG148050.017.2914541
CGGAGCT211850.017.2546791
CCTCTGA185700.017.1829381
GAATGAA144250.017.0860251
AGCCTAA177600.016.9500711
CTCTACG209950.016.8939171
CTGCCTA166050.016.8891121
AGTTGGT229600.016.8749331
GCTCTGT192800.016.8552841
CGCTATC165250.016.7499161
ACGATAC203150.016.71051
Produced by FastQC (version 0.11.5)