FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47944732
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACTAAC192500.017.8929351
CGACCTT274850.017.8527951
CAATGGA259100.017.7860038
CCGGGAT173550.017.7210731
CGGACTG150200.017.5018161
CGCTGGA198400.017.4576231
GGGTTGC180100.017.4076771
ATAAGAG162200.017.3098831
GACCTGG154600.017.2978881
TACTTGT198550.017.2917271
ACGAGCC168850.017.2865721
TTGACTT215500.017.1322781
GAACCTA174900.017.1220021
CTTTGCG167000.017.114951
GTCGTAA180350.017.108951
TCTGGAA166650.016.9689541
TGCCAAA178900.016.9651491
AGCCTAA218400.016.9556921
TCCCGAT153700.016.9257281
ATCGAGT153800.016.8950081
Produced by FastQC (version 0.11.5)