FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36657404
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTACC173500.017.9959451
GACTAAC108450.017.4737631
TGCGGGT106700.017.4379541
CGATTGA133250.017.327131
ATGCGAT103750.017.2413921
CCACTAC162750.017.2388021
TGGCCAG164750.017.2260481
CCTACCA170200.017.2213481
GGCGACT102200.017.2157881
GGGACCT97200.017.1749671
CCGGGAT91700.017.1569161
TATTGGT127200.017.1378083
AGACGTT125100.017.040621
CGCTTCA116750.016.9421331
ACGATGT131500.016.9191171
CGACCTT134850.016.8589421
CTTTGCG110850.016.8033661
GGCCGAA99100.016.7910399
CTGATCC108100.016.7441391
TAGCCGG114050.016.695621
Produced by FastQC (version 0.11.5)