FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12687082
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACCTA85200.018.1808641
CTGATAG56900.018.1133961
CTGAAGT53100.018.0014971
TCTATTG89300.017.9571511
ATGCGAT44450.017.890191
GAAGCAG53400.017.8814411
CAAGGAC65350.017.7864518
TGATTTC61250.017.7178151
GCTGCGA53850.017.7132511
ACACCCT53250.017.7041051
TGAGCAT56400.017.5931821
GCGATCA50450.017.5547454
CCGAATT32700.017.51271410
GCACATA58650.017.452331
AGGATGG45900.017.3975968
CGAACAT55300.017.3949761
TATATGA39200.017.3878129
AGGGATG36450.017.381291
TGCTACC44500.017.3705441
GGGACCT34300.017.3218881
Produced by FastQC (version 0.11.5)