FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47822566
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACCTT271800.017.8506281
CAATGGA259950.017.816638
GACTAAC192250.017.7515341
CCGGGAT167900.017.7438561
CGGACTG146800.017.5543731
CGCTGGA202700.017.4795151
GGGTTGC181400.017.3871211
TTGACTT221100.017.3000891
ATAAGAG163500.017.2818661
TGCCAAA177850.017.2796041
TACTTGT191200.017.2676181
GAACCTA176250.017.212851
GACCTGG157150.017.2084961
ACGAGCC172950.017.173161
TCTGGAA162200.017.0839311
GGGACCT124700.016.9861931
TCCCGAT153100.016.9838371
CTTTGCG159450.016.9032291
ATCGAGT152600.016.8209441
CGGACAC193900.016.7561551
Produced by FastQC (version 0.11.5)