FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35739550
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGTAG125650.017.9902361
CAATGAA139950.017.601028
CCTACCA169050.017.4631631
CGATTGA134750.017.407641
GAGCAGA101250.017.3754041
GCTCCTA186600.017.357141
TGAGCCG166350.017.3006821
CCGGGAT91550.017.2783161
ATGAATG115400.017.2132210
ACTGAAC93950.017.178371
TGGGCGT124550.017.0303961
AGTGAAC94400.017.0288018
AAATGCC127450.017.0282841
ATGCGAT101000.016.961861
GACTAAC95850.016.9528881
GACCTGG124600.016.9431111
TAAACCG126950.016.9374261
GCGCGAT89350.016.9184131
AGCTGAA90100.016.8872878
CGTTGGG184500.016.842951
Produced by FastQC (version 0.11.5)