FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28388458
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACTG111050.018.2299771
GACTAAC123750.018.0595971
GGCTCGA98800.017.6947481
CGTGAGC90450.017.4267521
GGTATTG139400.017.3602491
CGGACAC94100.017.3206231
CGACCTT124600.017.3193021
TTAGGCA114800.017.308411
CCGTACT108900.017.2520851
TTTACTG107650.017.1328741
TTAACTC93050.017.1029071
GCGCAAC146700.017.0963751
ACCCACT92500.017.0842881
TTGACGA88500.017.0801210
GGGACCT79250.017.0427461
AGCTTGA115050.017.033371
ATGCGAT77950.017.0284581
CGTCACT110400.017.0085181
CAATGAA76800.016.9636828
AAACCTG81300.016.9614471
Produced by FastQC (version 0.11.5)